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SRA Metadata Collector


(0)
offered by imlay.ben4 users

Overview

This add-on is for extracting SRA run information from SRP, PRJNA, or GSE accessions; or with SRA search terms.
SRA metadata, especially if linked to other NCBI databases such as GSE or Bioproject, is difficult to collect.

The aim of this add-on is to make that process simpler. Simply find studies of interest and submit them in this sheets add-on. The script will then query the NCBI databases and return run metadata for any associated runs.

Alternatively, SRA search terms may be entered to collect all metadata associated with a given term.

Try submitting GSE103299, MRC5, or PRJNA393626!

Browse studies through these databases:

https://www.ncbi.nlm.nih.gov/sra
https://www.ncbi.nlm.nih.gov/geo/
https://www.ncbi.nlm.nih.gov/bioproject

Details

Version: 12
Updated: August 14, 2019
Language: English (United States)