BioJupies Generator
Item media 3 screenshot
Item video thumbnail
Item media 2 screenshot
Item media 3 screenshot
Item video thumbnail
Item video thumbnail
Item media 2 screenshot
Item media 3 screenshot

Overview

Ma'ayan Lab

BioJupies Generator is a Jupyter Notebooks generator that enables users to easily create, store, and deploy Jupyter Notebooks containing RNA-seq data analyses. Through an intuitive interface, novice users can rapidly generate tailored reports to analyze RNA-seq datasets from the NCBI's gene expression omnibus (GEO). The reports contain data visualization of the samples, differential expression and enrichment analyses, and querying signatures against the LINCS L1000 dataset for small molecule that can mimic or reverse signatures. By combining an intuitive user interface for notebook generation with options to generate custom analysis scripts, BioJupies Generator addresses computational needs of both experimental and computational biologists.

5 out of 54 ratings

Google doesn't verify reviews. Learn more about results and reviews.

Review's profile picture

Amar KoletiMar 5, 2018

Great Idea.

2 out of 3 people found this helpful

Details

  • Version
    1.2.4
  • Updated
    May 30, 2021
  • Offered by
    maayanlabapps
  • Size
    151KiB
  • Languages
    English (United States)
  • Developer
    Email
    maayanlabapps@gmail.com
  • Non-trader
    This developer has not identified itself as a trader. For consumers in the European Union, please note that consumer rights do not apply to contracts between you and this developer.

Privacy

The developer has disclosed that it will not collect or use your data.

This developer declares that your data is

  • Not being sold to third parties, outside of the approved use cases
  • Not being used or transferred for purposes that are unrelated to the item's core functionality
  • Not being used or transferred to determine creditworthiness or for lending purposes

Support

Related

Datasets2Tools

5.0(2)

Ma'ayan Lab

ARCHS4

5.0(7)

Ma'ayan Lab

PubPeer

3.7(26)

Show links to existing PubPeer comments

Papers by ReadCube

4.1(40)

Easily import articles and webpages to your Papers by ReadCube library.

Sciwheel Browser Extension

4.7(59)

Browser Extension from Sciwheel

Gene Info

5.0(14)

View gene information by double clicking a gene name or accession on any webpage.

Scite

3.9(30)

scite allows users to see how a publication has been cited, providing the citation context and classification

FAIR-biomed

5.0(2)

Open data resources in the biomedical domain

FAIRshake

5.0(1)

Get the FAIR score and submit a FAIR assessment for any biomedical digital object right from its homepage.

Lazy Scholar

4.2(63)

Automatic check for full text, details, and metrics of scientific articles, plus comments, citations, fast sharing and more.

Pubmed Impact Factor

4.4(59)

Shows impact factors/JCR quartile, filter search results by impact factors/JCR quartile, and more

BioSeek Reader

4.4(7)

A next generation text analysis tool

Datasets2Tools

5.0(2)

Ma'ayan Lab

ARCHS4

5.0(7)

Ma'ayan Lab

PubPeer

3.7(26)

Show links to existing PubPeer comments

Papers by ReadCube

4.1(40)

Easily import articles and webpages to your Papers by ReadCube library.

Sciwheel Browser Extension

4.7(59)

Browser Extension from Sciwheel

Gene Info

5.0(14)

View gene information by double clicking a gene name or accession on any webpage.

Scite

3.9(30)

scite allows users to see how a publication has been cited, providing the citation context and classification

FAIR-biomed

5.0(2)

Open data resources in the biomedical domain

Google apps